Analysis of the interaction between Arabidopsis ERF13, WRKY33 and the TGMV AL1629 promoter

dc.contributor.advisorSunter, Garry
dc.contributor.authorSamant, Neha Shirish
dc.contributor.committeeMemberEngelberth, Jurgen
dc.contributor.committeeMemberCassill, Aaron
dc.date.accessioned2024-02-12T20:03:00Z
dc.date.available2024-02-12T20:03:00Z
dc.date.issued2012
dc.descriptionThis item is available only to currently enrolled UTSA students, faculty or staff. To download, navigate to Log In in the top right-hand corner of this screen, then select Log in with my UTSA ID.
dc.description.abstractTomato Golden Mosaic virus (TGMV), a member of the Geminiviridae family of plant-infecting DNA viruses, is able to interact with different host factors to regulate its gene expression. The TGMV AL2 protein is a transcriptional activator, encoded by the AL1629 complementary sense transcript. My research focuses on the TGMV AL1629 promoter and its interaction with Arabidopsis transcription factors. It has been previously reported that a host factor, Ethylene Response Factor 13 (AtERF13) binds to a specific nine base pair sequence (AACGTCATC) within the TGMV AL1629 promoter. My results demonstrate that AtERF13 interacts with the TGMV AL1629 promoter in vivo using Chromatin Immunoprecipitation (ChIP). ERFs are transcription factors that are induced upon external stimuli including viral challenge, and I have shown ERF13 is induced upon TGMV infection within 24 hours, after which expression levels decrease as over time. This suggests that induction of ERF by geminivirus infection is an early response. Although ERFs appear to bind to GCC box sequences within promoters, the TGMV AL1629 promoter lacks such a sequence element. However, Tomato ERF Pti4 interacts with both GCC as well as non-GCC containing promoter sequences. This suggests the possibility that ERFs may interact with promoters in conjunction with other host factors. My studies have revealed an interaction between AtERF13 and AtWRKY33, another plant transcription factor that plays a role in the positive regulation of transcription. This work suggests that a complex consisting of AtERF13 and AtWRKY33 may regulate the geminivirus AL1629 promoter to activate AL2 gene expression. Together these results indicate that geminiviruses may target proteins induced in response to infection for regulation of viral genes. Disrupting interactions between virus and host could provide a way to develop resistance strategies against this devastating group of plant viruses.
dc.description.departmentIntegrative Biology
dc.format.extent69 pages
dc.format.mimetypeapplication/pdf
dc.identifier.isbn9781267843814
dc.identifier.urihttps://hdl.handle.net/20.500.12588/5424
dc.languageen
dc.subjectAL1629
dc.subjectPromoter
dc.subjectERF13
dc.subjectWRKY 33
dc.subjectTomato Golden Mosaic Virus
dc.subject.classificationVirology
dc.titleAnalysis of the interaction between Arabidopsis ERF13, WRKY33 and the TGMV AL1629 promoter
dc.typeThesis
dc.type.dcmiText
dcterms.accessRightspq_closed
thesis.degree.departmentIntegrative Biology
thesis.degree.grantorUniversity of Texas at San Antonio
thesis.degree.levelMasters
thesis.degree.nameMaster of Science

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